Adds co_occurs_with, temporally_precedes, possibly_caused_by and
asserted_by to the relation vocabulary with Causal and Hypothetical
predicates. Entities mentioned together now co-occur rather than being
'related'; association hypotheses record possibly_caused_by and their
basis (temporal association only); caused_by is reserved for explicit
operator statements and nothing automatic writes it. Documented in
docs/graph.md and checked end to end.